Sequencing I/O — parsers and writers for ABIF/SCF/FASTA/FASTQ and related bioinformatics formats
Sequence Globally Unique Identifier (SEGUID) Checksums for Linear, Circular, Single- and Double-Stranded Biological Sequences
Converts DNA sequences to RNA sequences.
Vue component for displaying an overview of a multiple sequence alignment
No description provided.
Simple bioinformatics CLI tools for sequence analysis and manipulation
A command-line tool for interacting with BINSEQ file formats.
High-performance SIMD-accelerated DNA sequence encoding supporting all IUPAC nucleotide codes
A library for efficient nucleotide sequence manipulation using 2-bit and 4-bit encodings
Count frequency of the letters ACGT in a genome using SIMD and parallelism
Search, hash, sort, fingerprint, and fuzzy-match strings faster via SWAR, SIMD, and GPGPU
High-performance FASTQ reader and writer with mmap-first design. Supports plain, gzip, and BGZF inputs/outputs; optional multi-line parsing; explicit paired-end reading; sync and async APIs; optional `noodles-bgzf` interop.
Quick k-mer-based FASTA/FASTQ sequence record extraction, and SAM/BAM record filtering plus file annotation with k-mer tags.
Rust bindings and wrapper for parasail, a SIMD C library for pairwise sequence alignment.
Approximate string matching using SIMD
My sequences please - a paired fastq grepper with regex support
High-performance FASTQ sequence counter
DNA for simple generators
.ab1 reader / ABIF reader; extracts the peak indexes, called sequence, quality scores, and ACGT values from sequencing files