MCP server integrating Google DeepMind's AlphaGenome for AI-powered genomic variant analysis with Claude Desktop
ENCODE Toolkit — Genomics research infrastructure with 20 MCP tools, 47 skills, 14 database integrations, and 7 pipelines for Claude Code
Graph-first tool runtime for agent workflows.
Arguably a Terminal API Client. Feature-full, free, open-source, offline and account-less.
ATAC-seq Tn5 insertion-bias shift: +4/-5 bp coordinate correction and insertion-site BED output
A rust framework to make using alevin-fry and alevin-fry-ATAC even simpler.
Paired-end insert-size distribution from a BAM: histogram TSV + summary with ATAC nucleosome fractions
A suite of tools for the rapid, accurate and memory-frugal processing single-cell and single-nucleus sequencing data.
support library for alevin-fry
A library for importing and managing various single-cell matrices.
Tools and utilities for manipulation of BAM files for unusual use cases. e.g. single cell, MCC
Rust implementation of piscem with semantic parity harness
A library for parsing the output CSV files of 10x Genomics *ranger pipelines with Python bindings.
Bascet is a tool to preprocess single-cell data, handling barcode detection, trimming, QC, and managing the execution of custom tools for each cell
Fast adapter and quality trimming for NGS data — Oxidized Edition
Service objects using composable contracts
Atacama API integration
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