bam stat
Comprehensive alignment statistics from BAM — Rust port of samtools stats
High-performance genomics I/O and interoperability layer
cfRNA QC + fragmentomics in a single BAM pass. Forked from seqeralabs/RustQC; extends with end-motif k-mers, soft-clip k-mers, fragment-length periodicity, per-gene Tier-2 features, panels, sex inference, SNP fingerprinting, saturation curves, and a versioned JSON+Parquet output schema.
Fast RNA-seq QC in a single pass: dupRadar, featureCounts, 8 RSeQC tools, preseq, samtools stats, and Qualimap — reimplemented in Rust
File format parsing for the Cyanea bioinformatics ecosystem
bioinformatics toolkit in rust
High-performance BAM/SAM/CRAM toolkit written in Rust 2024. Drop-in samtools-compatible CLI (view/sort/index/merge/markdup/flagstat) plus a library API for embedding directly into aligners and variant callers.
Heterozygote phasing of aligned reads — Rust port of samtools phase
fastleng - read length statistics tool
Genome-wide coverage distribution of one or more BAMs: per-bin sampled read counts (--out-raw-counts) plus per-sample summary stats — Rust port of deeptools plotCoverage
A tool for estimating the copy number of large tandem repeats