BioC API client — retrieve annotated PubMed and PMC articles with named entity recognition
MCP server for accessing PMC Open Access articles in BioC format
Text mining client for PubTator/BioC APIs with entity annotations and relation discovery
Bioconductor classes, generics and methods, implemented in Javascript.
A simple typescript dependency injection
A set of function to detect bioinformatics file types (bam, gff3, bed, vcf, tsv, bigwig)
Palo Alto Networks Cortex XDR client library
DESeq2 fpkm(): median-of-ratios robust-normalized FPKM of a gene count matrix given per-gene basepair lengths
DESeq2 fpm(): fragments per million of a gene count matrix, robust median-of-ratios library sizes (default) or raw column totals
DESeq2 normTransform: log2(count / size-factor + 1) of a gene count matrix
DESeq2 rlog regularized-log transform of a gene count matrix
DESeq2 median-of-ratios size factors per sample from a gene count matrix
DESeq2 blind variance-stabilizing transform of a gene count matrix
(Partial) port of biocommons/bioutils to Rust
The original version of caching files is implemented in R as a part of Bioconductor project: https://www.bioconductor.org/packages/release/bioc/html/BiocFileCache.html
Bio-chip intelligence framework: multi-sensor EEG+motion fusion + rig-core LLM orchestration + ECDSA-signed data provenance
SimpleBioC is a simple parser / builder for BioC data format. BioC is a simple XML format to share text documents and annotations. You can find more information about BioC from the official BioC web site (http://www.ncbi.nlm.nih.gov/CBBresearch/Dogan/BioC/)
biocgem command line tools
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