FASTA utility toolkit — count, chroms, len, revcomp, rename, tab, wrap, unique, convert, and more
A high-performance genomics libary specialized in handling BAM and BigWig files
GC and sequence utilities
Queryable indexed fasta using a mmapped file
Extract multiple genes in genomic contigs using reference fasta file
Read NCBI Taxonomy Database from files and work with NCBI Taxonomy DB
Find motifs using Gibbs Sampler, Median String, and Randomized Motif Search algorithms in a fasta formatted file of reads Refer to the README to understand the input data
High-performance FASTA/FASTQ IO and minimizer-based k-mer analysis utilities for Rust bioinformatics pipelines.
A nice toolbox for AI- using Hierarchical-Mixture of Experts
Pure-Rust implementation of NCBI BLAST (Basic Local Alignment Search Tool)
genome classification, probminhash hnsw, genome search
Calculate relative synonymous codon usage for coding DNA sequences in a fasta file