Multi purpose fasta toolkit
A minimal fasta toolkit.
FUSTA leverages the FUSE interface to transparently manipulate multiFASTA files as independent files
Per-record statistics for FASTA files (num_seqs, sum_len, GC%, N50, …) — Rust port of `seqkit stats` (FASTA-only subset).
Make quick statistics in windows from a fasta file.
FASTA → SBOL 3 importer for the sbol-rs ecosystem. Pure-Rust, zero new transitive dependencies.
fakit: a simple program for fasta file manipulation
Ultra-fast, lazy, zero-copy Multi-FASTA parser.
Split a fasta file into several fasta files
A fast, parallel k-mer counter for DNA sequences in FASTA and FASTQ files
Fasta file parser
Fast TUI toolkit for viewing, translating, and manipulating biological sequences.
Extract DNA Fasta sequence from assembly files.
Rack Server API
Provides nice, programmatic access to fasta and fastq files, as well as providing Sequence and Quality helper classes. No need for BioRuby ;)
Simple FASTA/FASTQ/QSEQ parser library for Ruby.
provides programmatic access to fasta files
Easy fasta filtering, wrapping, calculating common statistics, sorting etc. Based on the fasta_tool script that I think was written by Jason Stajich.
Fast processing of FASTA/FASTQ files - a ruby wrapper around seqtk
ools to work with fasta files, indexed with samtools. The initial releases depend on bio-samtools, but that will change
Read/write compressed fastq or fasta files in fqbin format
Simulates MS1 runs given amino acid FASTA files. Outputs an MZML file. Can simulate specific data if given an MZML file containing a single isolated peptide peak.
A fast FASTA/FASTQ parser based on kseq.h by Heng Li
scbi_fasta is a ruby gem to read FASTA+QUAL files (DNA/RNA sequences).