High-performance tools for UMI-tagged sequencing data: extraction, grouping, and consensus calling
Consensus calling algorithms for fgumi: simplex, duplex, and CODEC
Structured metric types and TSV writer for fgumi operations
SAM/BAM record utilities, CIGAR parsing, and read-pair clipping for fgumi
UMI assignment strategies and utilities for fgumi
BGZF block reading, decompression, and compression utilities
DNA sequence utilities: complement, reverse-complement, 2-bit encoding
Raw byte-level operations on BAM alignment records
SIMD-accelerated FASTQ parsing using Helicase-style bitmask operations
Fast SAM/BAM sorter (installs the `mako` binary).
Fast Rust CLI toolkit for sequencing QC metrics