Microbial genome dereplicator
Command-line interface for detecting macromolecular systems in microbial genomes.
Core library for detecting macromolecular systems in microbial genomes.
Command-line interface for Orphos, a tool for finding protein-coding genes in microbial genomes.
Core library for Orphos, a tool for finding protein-coding genes in microbial genomes.
Striped UniFrac for comparing microbiomes using optimal balanced parenthesis
genome classification, probminhash hnsw archaea
bacdive rust analyzer for microbial genomics
Microbial genomics utility functions
ANCOM differential abundance (Mandal et al 2015) — scikit-bio skbio.stats.composition.ancom equivalent: per-feature W statistic from pairwise log-ratio one-way ANOVA, with the tau/theta detection cutoff
Bascet is a tool to preprocess single-cell data, handling barcode detection, trimming, QC, and managing the execution of custom tools for each cell
Accelerated DNA sequence search and [host] depletion using minimizers
A hATOM feed parser
Microbial Genomes Atlas
Scripts related to the IMG (Integrated Microbial Genomes) database
Reads metadata from Integrated Microbial Genomes (IMG) metadata files into a programmaticly useful state.
Graphical User Interface for the Microbial Genomes Atlas