Results for purcel

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PLINK1 case/control association test (chi-squared + trend + linear regression)

PLINK1 X-chromosome sex check: per-sample inbreeding F and male/female imputation (plink --check-sex)

IBS-based complete-linkage clustering of samples (plink --cluster)

PLINK1 pairwise SNP×SNP logistic-regression interaction scan (plink --epistasis)

PLINK1 --flip-scan: LD-sign strand-inconsistency QC scan (per-SNP positive/negative correlation matches between cases and controls)

PLINK1 per-variant allele frequency report (plink --freq)

PLINK1 per-variant genotype-class counts (plink --freqx)

PLINK1 method-of-moments inbreeding coefficient F per sample (plink --het)

PLINK1 runs of homozygosity via the scanning-window algorithm (plink --homozyg)

Pairwise LD (r²) computation and LD matrix export from PLINK1 binary filesets

Per-sample and per-variant genotype missingness from a PLINK1 binary fileset (plink --missing)

PLINK1 full case/control genotypic association (--model): GENO, TREND, ALLELIC, DOM, REC