A parser for SBML
Rust bindings for libSBML
SBML parser written in Rust.
COnstraint Based Reconstruction and Analysis (COBRA) in Rust
Streaming SBML L3V1 + FBC2 + groups writer for gapsmith.
A parser for SBML
Library for working with parametrized Boolean networks.
The EnzymeML Rust library
Alignment abstraction for gapsmith: blast/diamond/mmseqs2 runners + precomputed TSV ingestion.
Command-line interface for gapsmith.
Core types for gapsmith: Model, Reaction, Metabolite, StoichMatrix, GPR.
Loaders for gapseq's reference data tables (SEED, MNXref, biomass JSON, pathway tables).