Results for bin-up

Utilities for UCSC Bioinformatics Genome Browser ( http://genome.ucsc.edu ) including calculation of a BIN index from a genomic interval to speed-up SQL queries, and conversion between 1-based full-closed (for humans) and 0-based half-open (for machienes) intervals

Have a complex setup for your ruby project? Is your bin/setup full of code with logical operations and functions? This makes it easier to ask the user when setting up what he needs.

This is an API wrapper for [five9 - Cloud Contact Center Software](http://www.five9.com/). In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/five9_webapi`. To experiment with that code, run `bin/console` for an interactive prompt.

Small script/plugin to run a DRb/IRB server inside of your Ruby application, so you can poke around while it's running. Original code from Charles Lowe [ruby-talk:250220], I just wrapped up into a nice package, because I think this is a cool development and debugging tool. [ruby-talk:250220]: http://blade.nagaokaut.ac.jp/cgi-bin/scat.rb/ruby/ruby-talk/250220

This gem will play rounds of a made up game that will w00t or blam players. The default players are listed in the bin/players.csv file. You can use your own players by specifying a csv listings of the names and health of each player. Example: Thomas,100 Michael,110 Judi,105 Then to use the file for execution, simply type in studio_game <path to file here> Many thanks to the folks at Pragmatic Studios for their help in assisting me with this gems creation. If you want to create a gem similar to this you can visit Pragmatic Studios and sign up for one of their classes. This is an example application used in The Pragmatic Studio's Ruby Programming course, as described at http://pragmaticstudio.com This code is Copyright 2014 Michael Nickey and The Pragmatic Studio. See the LICENSE file.

# DnsChecker Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/dns_checker`. To experiment with that code, run `bin/console` for an interactive prompt. ## Installation Add this line to your application's Gemfile: ```ruby gem 'dns_checker' ``` And then execute: $ bundle Or install it yourself as: $ gem install dns_checker ## Usage Just use it! ## Development After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org). ## Contributing Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/dns_checker. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](contributor-covenant.org) code of conduct. ## License The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).

pikuri-assistant ships the demo +bin/pikuri-assistant+ binary on top of pikuri-core + pikuri-skills + pikuri-mcp: an interactive chat agent the user hand-edits to declare a +Pikuri::Mcp::Registry+ of MCP servers. The +Pikuri.prompt+ search path picks up this gem's +prompts/pikuri-assistant.txt+ automatically on require — same multi-gem prompt-dir pattern as pikuri-code.

# Optio Welcome to your new gem! In this directory, you'll find the files you need to be able to package up your Ruby library into a gem. Put your Ruby code in the file `lib/optio`. To experiment with that code, run `bin/console` for an interactive prompt. ## Installation Add this line to your application's Gemfile: ```ruby gem 'optio' ``` And then execute: $ bundle Or install it yourself as: $ gem install optio ## Usage Write usage instructions here ## Development After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake test` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org). ## Contributing Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/optio. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct. ## License The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT). ## Code of Conduct Everyone interacting in the Optio project’s codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/[USERNAME]/optio/blob/master/CODE_OF_CONDUCT.md).

pikuri-code adds the shell-and-dev-loop layer on top of pikuri-workspace's filesystem tools: a +Pikuri::Code::Bash+ that runs commands via the +Pikuri::Subprocess+ chokepoint with +Confirmer+ gating (optionally wrapped in a +Pikuri::Code::Bash::Sandbox::Bubblewrap+ filesystem sandbox), plus the demo +bin/pikuri-code+ binary that wires file + shell + web tools into an interactive coding agent rooted at the current working directory. The +Pikuri.prompt+ search path picks up this gem's +prompts/coding-system-prompt.txt+ automatically on require.

# Cryptophysh My attempt to produce a solution to the requirements listed [here](https://github.com/krystal/code-tasks/blob/main/password-generator.md). Essentially, a library/gem you can include in to your own code to add a `::generate_password` class method on a class. I've pushed the built gem up to RubyGems for completeness' sake. ## Installation Install the gem and add to the application's Gemfile by executing: $ bundle add cryptophysh If bundler is not being used to manage dependencies, install the gem by executing: $ gem install cryptophysh ## Usage ### Extending your own class `require cryptophysh` and Add to your class: `extend Cryptophysh` Your class will now have access to the `::generate_password` class method. ### Using the Cryptophysh::PasswordGenerator Class See the YARD documentation on the class itself for details. ## Development After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and the created tag, and push the `.gem` file to [rubygems.org](https://rubygems.org). ## Contributing Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/cryptophysh. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [code of conduct](https://github.com/kryptykphysh/cryptophysh/blob/master/CODE_OF_CONDUCT.md). ## License The gem is available as open source under the terms of the [MIT License](https://opensource.org/licenses/MIT). ## Code of Conduct Everyone interacting in the Cryptophysh project's codebases, issue trackers, chat rooms and mailing lists is expected to follow the [code of conduct](https://github.com/kryptykphysh/cryptophysh/blob/master/CODE_OF_CONDUCT.md).

Hakto Safe SDBM Wrapper ======================= ## Introduction Hakto Safe SDBM Wrapper is a safe wrapper of SDBM library. Hakto has compatibility of instance method's interface that is in SDBM class. Hakto enables to tighten up a code that uses SDBM library like following codes. **before** class Klass def initialize(db_path) @db_path = db_path end def method1 SDBM.open(@db_path) do |dbm| dbm["hoge"] = "HOGE" end end def method2 SDBM.open(@db_path) do |dbm| dbm["hoge"] end end : end **after** class Klass def initialize(db_path) @sdb = Hakto::SafeSDBM.new(db_path) end def method1 sdb["hoge"] = "HOGE" end def method2 sdb["hoge"] end : end ## Operation Environment We checked good operation within following environment. - Linux（openSUSE 12.2）・Mac OS X 10.8.2 - Ruby 1.9.3 ## Architectonics - **bin** - **doc** :: Rdoc documents. - **lib** - **hakto** - **safe_sdbm.rb** :: Class of SafeSDBM - **LICENSE** - **Rakefile** :: Rakefile that is used to generate gem file - **README.md** - **README_jp.md** - **test** :: Unit tests - **tb_safe_sdbm.rb** :: Unit test for SafeSDBM ## Install Download hakto-x.y.z.gem, then execute following command to install Hakto. `$ sudo gem install hakto-x.y.z.gem` On the other hand, you can install from RubyGems.org to use following command. `$ sudo gem install hakto` Also you can install Hakto without gem. Allocate the safe_sdbm.rb where is ruby interpreter can load Hakto. ## Sample code See tb_safe_sdbm.rb file. It is an unit test code, and it doubles with sample code. ## API document See following website: [http://quellencode.org/hakto-doc/](http://quellencode.org/hakto-doc/ "") ## About Author Moza USANE [http://blog.quellencode.org/](http://blog.quellencode.org/ "") mozamimy@quellencode.org

Inventory Inventory keeps track of the contents of your Ruby¹ projects. Such an inventory can be used to load the project, create gem specifications and gems, run unit tests, compile extensions, and verify that the project’s content is what you think it is. ¹ See http://ruby-lang.org/ § Usage Let’s begin by discussing the project structure that Inventory expects you to use. It’s pretty much exactly the same as the standard Ruby project structure¹: ├── README ├── Rakefile ├── lib │ ├── foo-1.0 │ │ ├── bar.rb │ │ └── version.rb │ └── foo-1.0.rb └── test └── unit ├── foo-1.0 │ ├── bar.rb │ └── version.rb └── foo-1.0.rb Here you see a simplified version of a project called “Foo”’s project structure. The only real difference from the standard is that the main entry point into the library is named “foo-1.0.rb” instead of “foo.rb” and that the root sub-directory of “lib” is similarly named “foo-1.0” instead of “foo”. The difference is the inclusion of the API version. This must be the major version of the project followed by a constant “.0”. The reason for this is that it allows concurrent installations of different major versions of the project and means that the wrong version will never accidentally be loaded with require. There’s a bigger difference in the content of the files. ‹Lib/foo-1.0/version.rb› will contain our inventory instead of a String: require 'inventory-1.0' class Foo Version = Foo.new(1, 4, 0){ authors{ author 'A. U. Thor', 'a.u.thor@example.org' } homepage 'http://example.org/' licenses{ license 'LGPLv3+', 'GNU Lesser General Public License, version 3 or later', 'http://www.gnu.org/licenses/' } def dependencies super + Dependencies.new{ development 'baz', 1, 3, 0 runtime 'goo', 2, 0, 0 optional 'roo-loo', 3, 0, 0, :feature => 'roo-loo' } end def package_libs %w[bar.rb] end } end We’re introducing quite a few concepts at once, and we’ll look into each in greater detail, but we begin by setting the ‹Version› constant to a new instance of an Inventory with major, minor, and patch version atoms 1, 4, and 0. Then we add a couple of dependencies and list the library files that are included in this project. The version numbers shouldn’t come as a surprise. These track the version of the API that we’re shipping using {semantic versioning}². They also allow the Inventory#to_s method to act as if you’d defined Version as ‹'1.4.0'›. Next follows information about the authors of the project, the project’s homepage, and the project’s licenses. Each author has a name and an email address. The homepage is simply a string URL. Licenses have an abbreviation, a name, and a URL where the license text can be found. We then extend the definition of ‹dependencies› by adding another set of dependencies to ‹super›. ‹Super› includes a dependency on the version of the inventory project that’s being used with this project, so you’ll never have to list that yourself. The other three dependencies are all of different kinds: development, runtime, and optional. A development dependency is one that’s required while developing the project, for example, a unit-testing framework, a documentation generator, and so on. Runtime dependencies are requirements of the project to be able to run, both during development and when installed. Finally, optional dependencies are runtime dependencies that may or may not be required during execution. The difference between runtime and optional is that the inventory won’t try to automatically load an optional dependency, instead leaving that up to you to do when and if it becomes necessary. By that logic, runtime dependencies will be automatically loaded, which is a good reason for having dependency information available at runtime. The version numbers of dependencies also use semantic versioning, but note that the patch atom is ignored unless the major atom is 0. You should always only depend on the major and minor atoms. As mentioned, runtime dependencies will be automatically loaded and the feature they try to load is based on the name of the dependency with a “-X.0” tacked on the end, where ‘X’ is the major version of the dependency. Sometimes, this isn’t correct, in which case the :feature option may be given to specify the name of the feature. You may also override other parts of a dependency by passing in a block to the dependency, much like we’re doing for inventories. The rest of an inventory will list the various files included in the project. This project only consists of one additional file to those that an inventory automatically include (Rakefile, README, the main entry point, and the version.rb file that defines the inventory itself), namely the library file ‹bar.rb›. Library files will be loaded automatically when the main entry point file loads the inventory. Library files that shouldn’t be loaded may be listed under a different heading, namely “additional_libs”. Both these sets of files will be used to generate a list of unit test files automatically, so each library file will have a corresponding unit test file in the inventory. We’ll discuss the different headings of an inventory in more detail later on. Now that we’ve written our inventory, let’s set it up so that it’s content gets loaded when our main entry point gets loaded. We add the following piece of code to ‹lib/foo-1.0.rb›: module Foo load File.expand_path('../foo-1.0/version.rb', __FILE__) Version.load end That’s all there’s to it. The inventory can also be used to great effect from a Rakefile using a separate project called Inventory-Rake³. Using it’ll give us tasks for cleaning up our project, compiling extensions, installing dependencies, installing and uninstalling the project itself, and creating and pushing distribution files to distribution points. require 'inventory-rake-1.0' load File.expand_path('../lib/foo-1.0/version.rb', __FILE__) Inventory::Rake::Tasks.define Foo::Version Inventory::Rake::Tasks.unless_installing_dependencies do require 'lookout-rake-3.0' Lookout::Rake::Tasks::Test.new end It’s ‹Inventory::Rake::Tasks.define› that does the heavy lifting. It takes our inventory and sets up the tasks mentioned above. As we want to be able to use our Rakefile to install our dependencies for us, the rest of the Rakefile is inside the conditional #unless_installing_dependencies, which, as the name certainly implies, executes its block unless the task being run is the one that installs our dependencies. This becomes relevant when we set up Travis⁴ integration next. The only conditional set-up we do in our Rakefile is creating our test task via Lookout-Rake⁵, which also uses our inventory to find the unit tests to run when executed. Travis integration is straightforward. Simply put before_script: - gem install inventory-rake -v '~> VERSION' --no-rdoc --no-ri - rake gem:deps:install in the project’s ‹.travis.yml› file, replacing ‹VERSION› with the version of Inventory-Rake that you require. This’ll make sure that Travis installs all development, runtime, and optional dependencies that you’ve listed in your inventory before running any tests. You might also need to put env: - RUBYOPT=rubygems in your ‹.travis.yml› file, depending on how things are set up. ¹ Ruby project structure: http://guides.rubygems.org/make-your-own-gem/ ² Semantic versioning: http://semver.org/ ³ Inventory-Rake: http://disu.se/software/inventory-rake-1.0/ ⁴ Travis: http://travis-ci.org/ ⁵ Lookout-Rake: http://disu.se/software/lookout-rake-3.0/ § API If the guide above doesn’t provide you with all the answers you seek, you may refer to the API¹ for more answers. ¹ See http://disu.se/software/inventory-1.0/api/Inventory/ § Financing Currently, most of my time is spent at my day job and in my rather busy private life. Please motivate me to spend time on this piece of software by donating some of your money to this project. Yeah, I realize that requesting money to develop software is a bit, well, capitalistic of me. But please realize that I live in a capitalistic society and I need money to have other people give me the things that I need to continue living under the rules of said society. So, if you feel that this piece of software has helped you out enough to warrant a reward, please PayPal a donation to now@disu.se¹. Thanks! Your support won’t go unnoticed! ¹ Send a donation: https://www.paypal.com/cgi-bin/webscr?cmd=_donations&business=now@disu.se&item_name=Inventory § Reporting Bugs Please report any bugs that you encounter to the {issue tracker}¹. ¹ See https://github.com/now/inventory/issues § Authors Nikolai Weibull wrote the code, the tests, the documentation, and this README. § Licensing Inventory is free software: you may redistribute it and/or modify it under the terms of the {GNU Lesser General Public License, version 3}¹ or later², as published by the {Free Software Foundation}³. ¹ See http://disu.se/licenses/lgpl-3.0/ ² See http://gnu.org/licenses/ ³ See http://fsf.org/

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