JavaScript Aide
This will hold codon parsers and utilities for JavaScript.
used to manipulate and convert genetic strings from nucleotide to codon to protein
Sirraya Codon is a programmable, intent-based platform that is user and context agnostic. Built on the Sirraya Intent Resolution Protocol (SIRP) and Codon Spec 1, it enables seamless automation and integration across devices and environments. With a modul
MCP Server for searching Swagger/OpenAPI documentation (Knife4j compatible)
CLI tool for viewing Cursor IDE token usage and costs via the dashboard API
Generic Mutation Mapper
Generate IDs with strategy like Twitter Snowflake and encode it in short string
Map genome to protein coordinates and back
Orchestration runtime for antibrittle agentic workflows
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MCP stdio bridge that delegates to the mcporter CLI
A comprehensive TypeScript library for molecular biology simulation, modeling the gene expression pathway from DNA transcription to polypeptide translation with biological accuracy.
A unique visualisation of any large chunk of DNA or RNA residing in ASCII text files (such as FASTA, GBK etc and also just .txt like my hand-made test files), AminoSee is a way to render huge genomics files into a left-to-right top-bottom PNG linear image
An Open Source Programming Language for Genetic Engineering
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Bioinformatics stuff
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## Installation
Paket dibuat oleh Bot GG Team AI
A DNA-RNA-Protein translator library
- The `content` value is changed to `html` as of statcodon 2.0.0. - `ignore` is **supported** as of statcodon 2.3.0/1.99.3-0. - `FORCE=1` is **supported** as of this package version 1.1.0. In 2.0.0+, use the `-f` option. - markdown imports are **supported
Yet another static site generator
Observability adapter for Hankweave — uploads execution traces to Braintrust and Langfuse
Bit packed and well-typed biological sequences
Convert transcripts between different file formats
Biology-themed terminal animations: DNA/RNA matrix rain and rotating codon-aware helices.
An optimized chr/pos/feature GTF/GFF sorter using a lexicographic-based index ordering algorithm written in Rust.
A pure-Rust port of OrfM - a simple and not slow open reading frame (ORF) caller
A crate to translate &str or String of RNA sequence with nucleotide into a Vec<&str> of their appropriate protein names.
Calculate relative synonymous codon usage for coding DNA sequences in a fasta file
Codon usage tables feature for jean
Prodigal: Prokaryotic Dynamic Programming Genefinding Algorithm (Rust reimplementation)
Rustygal: Prokaryotic Dynamic Programming Genefinding Algorithm (Rust reimplementation of prodigal)
Sequence I/O and manipulation for the Cyanea bioinformatics ecosystem
Library for working with nucleotide and amino acid sequences
Parses the NCBI genetic code table, generating hash maps of each species' name, start codons, stop codons and codon table. The output of CodonTableParser can be customized easily and used to update the respective constants of BioRuby's CodonTable class whenever the original data has changed.
A ruby gem that parses codon table from http://www.kazusa.or.jp/codon and turn it to hash or JSON
ORF Finder is a library that with a sequence of nucletotides it finds the all the possible ORFs in the sequence. It will look for a sequence that starts with a start codon and ends with a stop codon. It will default to the beggining of the sequence if it cannot find an ORF long enought with the start codons. It will also use the end of the sequence if no stop codons are present in the sequence reading frame.
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