Event-based programming structure for node.js (can be used like promises).
The real PostgreSQL query parser
PostgreSQL AST Deparser
The real PostgreSQL query parser
PostgreSQL AST types from the real Postgres parser
The real PostgreSQL query parser
PGPM types
PGPM server utils
PostgreSQL identifier quoting and keyword classification utilities
PGPM environment management
PostgreSQL environment configuration utilities
The LaunchQL Proto parser
PGPM Package and Migration Tools
PostgreSQL connection pool LRU cache manager
Rope-based persistent sequence type
Safely access and modify nested object properties using string paths
csv to pg statements
Stringify JSON as JavaScript with extended serialization capabilities
PostgreSQL AST enums from the real Postgres parser
Clone and customize template repositories with variable replacement
Simple logger utility
PostgreSQL AST traversal utilities for pgsql-parser
Constructive GraphQL Query
TypeScript-first library for building beautiful CLI interfaces with interactive prompts
This gem provides a workflow construction kit for rails apps. Users can arrange workflow bricks in a sequence for each workflow and add parameters. When a workflow is executed, each workflow brick executes a callback method written in ruby and passes the parameters.
Takes a GFF and genomic sequence file, constructs CDS and when given a position and alternative base will report whether this change is in a coding region and if it results in a synonymous or non-synonymous mutation.
Huffnpuff implements a general purpose Huffman Coding system that uses a construction string which can implement any system. This also includes the bitfifo gem which allows variable length bit sequences to address the internal table of the Huffnpuff object instance. Huffman coding is essential for compression techniques such as MPEG, and PKZIP.
A jig is an ordered sequence of objects (usually strings) and named _gaps_. When rendered as a string by Jig#to_s, the objects are rendered calling #to_s on each object in order. The gaps are skipped. A new jig may be constructed from an existing jig by 'plugging' one or more of the named gaps. The new jig shares the objects and their ordering from the original jig but with the named gap replaced with the 'plug'. Gaps may be plugged by any object or sequence of objects. When a gap is plugged with another jig, the contents (including gaps) are incorporated into the new jig. Several subclasses (Jig::XML, Jig::XHTML, Jig::CSS) are defined to help in the construction of XML, XHTML, and CSS documents. This is a jig with a single gap named :alpha. Jig.new(:alpha) # => <#Jig: [:alpha]> This is a jig with two objects, 'before' and 'after' separated by a gap named :middle. j = Jig.new('before', :middle, 'after) # => #<Jig: ["before", :middle, "after"]> The plug operation derives a new jig from the old jig. j.plug(:middle, ", during, and") # => #<Jig: ["before", ", during, and ", "after"]> This operation doesn't change j. It can be used again: j.plug(:middle, " and ") # => #<Jig: ["before", " and ", "after"]> There is a destructive version of plug that modifies the jig in place: j.plug!(:middle, "filled") # => #<Jig: ["before", "filled", "after"]> j # => #<Jig: ["before", "filled", "after"]> There are a number of ways to construct a Jig and many of them insert an implicit gap into the Jig. This gap is identified as :___ and is used as the default gap for plug operations when one isn't provided:
= Biological Extensions to the InterMine Webservice Client Library This library is a set of extensions to the InterMine Webservices client, providing access for data in biological formats. It directly extends the InterMine classes, providing extra methods to the Query class. == Example Get all sequences for proteins on "h", "r", "eve", "bib" and "zen": require "rubygems" require "intermine/service" require "intermine/bio" s = Service.new("www.flymine.org/query") puts s.query("Gene").select("proteins").where(:symbol => %w{h r eve bib zen}).fasta Process the locations of these genes one at a time: s.query.select("Gene").where(:symbol => %w{h r eve bib zen}).bed do |line| process line end == Who is this for? InterMine data warehouses are typically constructed to hold Biological data, and as this library facilitates programmatic access to these data, this install is primarily aimed at bioinformaticians. In particular, users of the following services may find it especially useful: * FlyMine (http://www.flymine.org/query) * YeastMine (http://yeastmine.yeastgenome.org/yeastmine) * RatMine (http://ratmine.mcw.edu/ratmine) * modMine (http://intermine.modencode.org/release-23) * metabolicMine (http://www.metabolicmine.org/beta) These extensions are aimed at bioinformaticians looking to integrate these sources of data into other workflows. For details on constructing queries, see the intermine documentation. == Support Support is available on our development mailing list: dev@intermine.org == License This code is Open Source under the LGPL. Source code for all InterMine code can be checked out from svn://subversion.flymine.org/flymine