Results for dev-documentation

An n-Dimension Rust Tensor Toolkit

= Webservice Client Library for InterMine Data-Warehouses This library provides an interface to the InterMine webservices API. It makes construction and execution of queries more straightforward, safe and convenient, and allows for results to be used directly in Ruby code. As well as traditional row based access, the library provides an object-orientated record result format (similar to ActiveRecords), and allows for fast, memory efficient iteration of result sets. == Example Get all protein domains associated with a set of genes and print their names: require "intermine/service" Service.new("www.flymine.org/query"). new_query("Pathway") select(:name). where("genes.symbol" => ["zen", "hox", "h", "bib"]). each_row { |row| puts row[:name]} == Who is this for? InterMine data warehouses are typically constructed to hold Biological data, and as this library facilitates programmatic access to these data, this install is primarily aimed at bioinformaticians. In particular, users of the following services may find it especially useful: * FlyMine (http://www.flymine.org/query) * YeastMine (http://yeastmine.yeastgenome.org/yeastmine) * RatMine (http://ratmine.mcw.edu/ratmine) * modMine (http://intermine.modencode.org/release-23) * metabolicMine (http://www.metabolicmine.org/beta) == How to use this library: We have tried to construct an interface to this library that does not require you to learn an entirely new set of concepts. As such, as well as the underlying methods that are common to all libraries, there is an additional set of aliases and sugar methods that emulate the DSL style of SQL: === SQL style service = Service.new("www.flymine.org/query") service.model. table("Gene"). select("*", "pathways.*"). where(:symbol => "zen"). order_by(:symbol). outerjoin(:pathways). each_row do |r| puts r end === Common InterMine interface service = Service.new("www.flymine.org/query") query = service.new_query("Gene") query.add_views("*", "pathways.*") query.add_constraint("symbol", "=", "zen") query.add_sort_order(:symbol) query.add_join(:pathways) query.each_row do |r| puts r end For more details, see the accompanying documentation and the unit tests for interface examples. Further documentation is available at www.intermine.org. == Support Support is available on our development mailing list: dev@intermine.org == License This code is Open Source under the LGPL. Source code for this gem can be checked out from https://github.com/intermine/intermine-ws-ruby

= Mcrypt - libmcrypt bindings for Ruby Mcrypt provides Ruby-language bindings for libmcrypt(3), a symmetric cryptography library. {Libmcrypt}[http://mcrypt.sourceforge.net/] supports lots of different ciphers and encryption modes. == You will need * A working Ruby installation (>= 1.8.6 or 1.9) * A working libmcrypt installation (2.5.x or 2.6.x, tested with 2.5.8) * A sane build environment == Installation Install the gem: gem install ruby-mcrypt --test -- --with-mcrypt-dir=/path/to/mcrypt/prefix If you're installing on Ubuntu: sudo apt-get install mcrypt libmcrypt-dev gem install ruby-mcrypt If you want to run the longer test suite, do this instead: MCRYPT_TEST_BRUTE=1 \ gem install ruby-mcrypt --test -- --with-mcrypt-dir=/path/to/mcrypt/prefix Put this in your code: require 'rubygems' require 'mcrypt' Or in Rails' environment.rb: gem "ruby-mcrypt", :lib => "mcrypt" == Usage crypto = Mcrypt.new(:twofish, :cbc, MY_KEY, MY_IV, :pkcs) # encryption and decryption in one step ciphertext = crypto.encrypt(plaintext) plaintext = crypto.decrypt(ciphertext) # encrypt in smaller steps while chunk = $stdin.read(4096) $stdout << crypto.encrypt_more(chunk) end $stdout << crypto.encrypt_finish # or decrypt: while chunk = $stdin.read(4096) $stdout << crypto.decrypt_more(chunk) end $stdout << crypto.decrypt_finish == Known Issues * Test coverage is lacking. If you find any bugs, please let the author know. == Wish List * IO-like behavior, e.g. crypto.open($stdin) { |stream| ... } == Author * Philip Garrett <philgarr at gmail.com> == Copyright and License Copyright (c) 2009-2013 Philip Garrett. Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

= Biological Extensions to the InterMine Webservice Client Library This library is a set of extensions to the InterMine Webservices client, providing access for data in biological formats. It directly extends the InterMine classes, providing extra methods to the Query class. == Example Get all sequences for proteins on "h", "r", "eve", "bib" and "zen": require "rubygems" require "intermine/service" require "intermine/bio" s = Service.new("www.flymine.org/query") puts s.query("Gene").select("proteins").where(:symbol => %w{h r eve bib zen}).fasta Process the locations of these genes one at a time: s.query.select("Gene").where(:symbol => %w{h r eve bib zen}).bed do |line| process line end == Who is this for? InterMine data warehouses are typically constructed to hold Biological data, and as this library facilitates programmatic access to these data, this install is primarily aimed at bioinformaticians. In particular, users of the following services may find it especially useful: * FlyMine (http://www.flymine.org/query) * YeastMine (http://yeastmine.yeastgenome.org/yeastmine) * RatMine (http://ratmine.mcw.edu/ratmine) * modMine (http://intermine.modencode.org/release-23) * metabolicMine (http://www.metabolicmine.org/beta) These extensions are aimed at bioinformaticians looking to integrate these sources of data into other workflows. For details on constructing queries, see the intermine documentation. == Support Support is available on our development mailing list: dev@intermine.org == License This code is Open Source under the LGPL. Source code for all InterMine code can be checked out from svn://subversion.flymine.org/flymine

The affixapi.com API documentation. # Introduction Affix API is an OAuth 2.1 application that allows developers to access customer data, without developers needing to manage or maintain integrations; or collect login credentials or API keys from users for these third party systems. # OAuth 2.1 Affix API follows the [OAuth 2.1 spec](https://datatracker.ietf.org/doc/html/draft-ietf-oauth-v2-1-08). As an OAuth application, Affix API handles not only both the collection of sensitive user credentials or API keys, but also builds and maintains the integrations with the providers, so you don't have to. # How to obtain an access token in order to get started, you must: - register a `client_id` - direct your user to the sign in flow (`https://connect.affixapi.com` [with the appropriate query parameters](https://github.com/affixapi/starter-kit/tree/master/connect)) - capture `authorization_code` we will send to your redirect URI after the sign in flow is complete and exchange that `authorization_code` for a Bearer token # Sandbox keys (developer mode) ### dev ``` eyJhbGciOiJFUzI1NiIsImtpZCI6Ims5RmxwSFR1YklmZWNsUU5QRVZzeFcxazFZZ0Zfbk1BWllOSGVuOFQxdGciLCJ0eXAiOiJKV1MifQ.eyJwcm92aWRlciI6InNhbmRib3giLCJzY29wZXMiOlsiLzIwMjMtMDMtMDEvZGV2ZWxvcGVyL2NvbXBhbnkiLCIvMjAyMy0wMy0wMS9kZXZlbG9wZXIvZW1wbG95ZWUiLCIvMjAyMy0wMy0wMS9kZXZlbG9wZXIvZW1wbG95ZWVzIiwiLzIwMjMtMDMtMDEvZGV2ZWxvcGVyL2lkZW50aXR5IiwiLzIwMjMtMDMtMDEvZGV2ZWxvcGVyL3BheXJ1bnMiLCIvMjAyMy0wMy0wMS9kZXZlbG9wZXIvcGF5cnVucy86cGF5cnVuX2lkIiwiLzIwMjMtMDMtMDEvZGV2ZWxvcGVyL3RpbWUtb2ZmLWJhbGFuY2VzIiwiLzIwMjMtMDMtMDEvZGV2ZWxvcGVyL3RpbWUtb2ZmLWVudHJpZXMiLCIvMjAyMy0wMy0wMS9kZXZlbG9wZXIvdGltZXNoZWV0cyJdLCJ0b2tlbiI6ImQ1OTZhMmYzLWYzNzktNGE1ZC1hMmRhLTk4OWJmYWViYTg1ZCIsImlhdCI6MTcwMjkyMDkwMywiaXNzIjoicHVibGljYXBpLWludGVybWVkaWF0ZS5kZXYuZW5naW5lZXJpbmcuYWZmaXhhcGkuY29tIiwic3ViIjoiZGV2ZWxvcGVyIiwiYXVkIjoiM0ZEQUVERjktMURDQTRGNTQtODc5NDlGNkEtNDEwMjc2NDMifQ.VLWYjCQvBS0C3ZA6_J3-U-idZj5EYI2IlDdTjAWBxSIHGufp6cqaVodKsF2BeIqcIeB3P0lW-KL9mY3xGd7ckQ ``` #### `employees` endpoint sample: ``` curl --fail \ -X GET \ -H 'Authorization: Bearer eyJhbGciOiJFUzI1NiIsImtpZCI6Ims5RmxwSFR1YklmZWNsUU5QRVZzeFcxazFZZ0Zfbk1BWllOSGVuOFQxdGciLCJ0eXAiOiJKV1MifQ.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.VLWYjCQvBS0C3ZA6_J3-U-idZj5EYI2IlDdTjAWBxSIHGufp6cqaVodKsF2BeIqcIeB3P0lW-KL9mY3xGd7ckQ' \ 'https://dev.api.affixapi.com/2023-03-01/developer/employees' ``` ### prod ``` eyJhbGciOiJFUzI1NiIsImtpZCI6Ims5RmxwSFR1YklmZWNsUU5QRVZzeFcxazFZZ0Zfbk1BWllOSGVuOFQxdGciLCJ0eXAiOiJKV1MifQ.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.2zdpFAmiyYiYk6MOcbXNUwwR4M1Fextnaac340x54AidiWXCyw-u9KeavbqfYF6q8a9kcDLrxhJ8Wc_3tIzuVw ``` #### `employees` endpoint sample: ``` curl --fail \ -X GET \ -H 'Authorization: Bearer eyJhbGciOiJFUzI1NiIsImtpZCI6Ims5RmxwSFR1YklmZWNsUU5QRVZzeFcxazFZZ0Zfbk1BWllOSGVuOFQxdGciLCJ0eXAiOiJKV1MifQ.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.2zdpFAmiyYiYk6MOcbXNUwwR4M1Fextnaac340x54AidiWXCyw-u9KeavbqfYF6q8a9kcDLrxhJ8Wc_3tIzuVw' \ 'https://api.affixapi.com/2023-03-01/developer/employees' ``` # Webhooks An exciting feature for HR/Payroll modes are webhooks. If enabled, your `webhook_uri` is set on your `client_id` for the respective environment: `dev | prod` Webhooks are configured to make live requests to the underlying integration 1x/hr, and if a difference is detected since the last request, we will send a request to your `webhook_uri` with this shape: ``` { added: <api.v20230301.Employees>[ <api.v20230301.Employee>{ ..., date_of_birth: '2010-08-06', display_full_name: 'Daija Rogahn', employee_number: '57993', employment_status: 'pending', employment_type: 'other', employments: [ { currency: 'eur', effective_date: '2022-02-25', employment_type: 'other', job_title: 'Dynamic Implementation Manager', pay_frequency: 'semimonthly', pay_period: 'YEAR', pay_rate: 96000, }, ], first_name: 'Daija', ... } ], removed: [], updated: [ <api.v20230301.Employee>{ ..., date_of_birth: '2009-11-09', display_full_name: 'Lourdes Stiedemann', employee_number: '63189', employment_status: 'leave', employment_type: 'full_time', employments: [ { currency: 'gbp', effective_date: '2023-01-16', employment_type: 'full_time', job_title: 'Forward Brand Planner', pay_frequency: 'semimonthly', pay_period: 'YEAR', pay_rate: 86000, }, ], first_name: 'Lourdes', } ] } ``` the following headers will be sent with webhook requests: ``` x-affix-api-signature: ab8474e609db95d5df3adc39ea3add7a7544bd215c5c520a30a650ae93a2fba7 x-affix-api-origin: webhooks-employees-webhook user-agent: affixapi.com ``` Before trusting the payload, you should sign the payload and verify the signature matches the signature sent by the `affixapi.com` service. This secures that the data sent to your `webhook_uri` is from the `affixapi.com` server. The signature is created by combining the signing secret (your `client_secret`) with the body of the request sent using a standard HMAC-SHA256 keyed hash. The signature can be created via: - create an `HMAC` with your `client_secret` - update the `HMAC` with the payload - get the hex digest -> this is the signature Sample `typescript` code that follows this recipe: ``` import { createHmac } from 'crypto'; export const computeSignature = ({ str, signingSecret, }: { signingSecret: string; str: string; }): string => { const hmac = createHmac('sha256', signingSecret); hmac.update(str); const signature = hmac.digest('hex'); return signature; }; ``` ## Rate limits Open endpoints (not gated by an API key) (applied at endpoint level): - 15 requests every 1 minute (by IP address) - 25 requests every 5 minutes (by IP address) Gated endpoints (require an API key) (applied at endpoint level): - 40 requests every 1 minute (by IP address) - 40 requests every 5 minutes (by `client_id`) Things to keep in mind: - Open endpoints (not gated by an API key) will likely be called by your users, not you, so rate limits generally would not apply to you. - As a developer, rate limits are applied at the endpoint granularity. - For example, say the rate limits below are 10 requests per minute by ip. from that same ip, within 1 minute, you get: - 10 requests per minute on `/orders`, - another 10 requests per minute on `/items`, - and another 10 requests per minute on `/identity`, - for a total of 30 requests per minute.

<div align='center'> # Insights4YOU Jekyll Theme A sleek and modern Jekyll theme inspired by the [Tabler Admin Dashboard](https://github.com/tabler/tabler). This theme offers a clean, professional, and responsive interface, making it ideal for developers, content creators, and businesses. Whether you're building documentation sites, admin panels, or project showcases, this theme provides a minimal-effort solution with customizable layouts and modern design elements.  [][repo] [][build] [][codacy] [][gem] [][gem] [][license] </div> ## 🌟 Features - 🌙 **Dark and Light Themes**: Switch between dark and light modes for a personalized experience - 📱 **Responsive Design**: Fully optimized for mobile, tablet, and desktop devices - 🔧 **Customizable Layouts**: Easily modify layouts to suit your needs - 🚀 **SEO Optimized**: Built-in support for Jekyll SEO tags to improve search engine visibility - 📦 **Gem-Based Installation**: Simple installation via RubyGems - 📝 **Markdown Support**: Write content using Markdown for simplicity and flexibility - 🎨 **Modern Design**: Inspired by the Tabler Admin Dashboard for a sleek and professional look - 📊 **Analytics Ready**: Add analytics scripts easily for tracking user interactions - 🔍 **Search Functionality**: Built-in search capabilities for content discovery - 🎯 **Clean Code**: Well-documented and maintainable codebase - 🛠️ **Developer Friendly**: Easy to extend and customize - 📱 **Mobile First**: Designed with mobile devices in mind ## 📋 Requirements - Ruby >= 2.7.0 - Jekyll ~> 4.2 - Bundler ~> 2.3 ## 🚀 Quick Start 1. **Install the theme:** ```ruby gem install insights4you-jekyll-theme ``` 2. **Create a new Jekyll site:** ```ruby jekyll new my-website ``` 3. **Add the theme to your Jekyll site's `Gemfile`:** ```ruby gem "insights4you-jekyll-theme" ``` 4. **Update your `_config.yml`:** ```yaml theme: insights4you-jekyll-theme ``` 5. **Install dependencies:** ```bash bundle install ``` 6. **Start your site:** ```bash bundle exec jekyll serve ``` ## 🎯 Demo Site To see the theme in action, check out the included example site: ```bash # Clone the repository git clone https://github.com/marciopaiva/insights4you-jekyll-theme.git # Navigate to theme directory cd insights4you-jekyll-theme # build and test make dev ``` Visit `http://localhost:4000` to see the demo site in action. ## 🎨 Customization ### Theme Configuration [WIP] ### Available Layouts - `default`: Standard page layout ### Custom Styling Create a new file `assets/css/custom.scss` to add your own styles: [WIP] ## 📝 Documentation ### Directory Structure [WIP] ### Creating Posts [WIP] ### Creating Pages [WIP] ## 🤝 Contributing We love your input! We want to make contributing to Insights4YOU as easy and transparent as possible. Please: 1. Fork the repository 2. Create your feature branch (`git checkout -b feature/amazing-feature`) 3. Commit your changes (`git commit -m 'Add amazing feature'`) 4. Push to the branch (`git push origin feature/amazing-feature`) 5. Open a Pull Request ## 📄 License This project is licensed under the MIT License - see the LICENSE file for details. ## 🙏 Acknowledgments - Tabler Admin Dashboard for design inspiration - Jekyll community for the amazing static site generator - All contributors who help improve this theme [repo]: https://github.com/marciopaiva/insights4you-jekyll-theme [build]: https://github.com/marciopaiva/insights4you-jekyll-theme/actions/workflows/gem-build.yml [codacy]: https://app.codacy.com/gh/marciopaiva/insights4you-jekyll-theme/dashboard [gem]: https://rubygems.org/gems/insights4you-jekyll-theme [license]: https://github.com/marciopaiva/insights4you-jekyll-theme/blob/master/LICENSE

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.

No description provided.