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= Webservice Client Library for InterMine Data-Warehouses This library provides an interface to the InterMine webservices API. It makes construction and execution of queries more straightforward, safe and convenient, and allows for results to be used directly in Ruby code. As well as traditional row based access, the library provides an object-orientated record result format (similar to ActiveRecords), and allows for fast, memory efficient iteration of result sets. == Example Get all protein domains associated with a set of genes and print their names: require "intermine/service" Service.new("www.flymine.org/query"). new_query("Pathway") select(:name). where("genes.symbol" => ["zen", "hox", "h", "bib"]). each_row { |row| puts row[:name]} == Who is this for? InterMine data warehouses are typically constructed to hold Biological data, and as this library facilitates programmatic access to these data, this install is primarily aimed at bioinformaticians. In particular, users of the following services may find it especially useful: * FlyMine (http://www.flymine.org/query) * YeastMine (http://yeastmine.yeastgenome.org/yeastmine) * RatMine (http://ratmine.mcw.edu/ratmine) * modMine (http://intermine.modencode.org/release-23) * metabolicMine (http://www.metabolicmine.org/beta) == How to use this library: We have tried to construct an interface to this library that does not require you to learn an entirely new set of concepts. As such, as well as the underlying methods that are common to all libraries, there is an additional set of aliases and sugar methods that emulate the DSL style of SQL: === SQL style service = Service.new("www.flymine.org/query") service.model. table("Gene"). select("*", "pathways.*"). where(:symbol => "zen"). order_by(:symbol). outerjoin(:pathways). each_row do |r| puts r end === Common InterMine interface service = Service.new("www.flymine.org/query") query = service.new_query("Gene") query.add_views("*", "pathways.*") query.add_constraint("symbol", "=", "zen") query.add_sort_order(:symbol) query.add_join(:pathways) query.each_row do |r| puts r end For more details, see the accompanying documentation and the unit tests for interface examples. Further documentation is available at www.intermine.org. == Support Support is available on our development mailing list: dev@intermine.org == License This code is Open Source under the LGPL. Source code for this gem can be checked out from https://github.com/intermine/intermine-ws-ruby

# Soft Delete > In a production app, you should probably never really delete anything. [source](https://twitter.com/theebeastmaster/status/966870021099180034) A soft-delete marks a record as deleted, and keeps it in the database for historical reference. ## Installation Add this line to your application's Gemfile: ```ruby gem "soft_delete-workbar", require: "soft_delete" ``` And then execute: $ bundle Or install it yourself as: $ gem install soft_delete-workbar ## Usage Safely "delete" records from your database without losing them permanently. * Add SoftDelete to a model ``` class MyModel < ActiveRecord::Base include SoftDelete end ``` * Add a `deleted_at` column to the model's database table ``` rails g migration AddSoftDeleteToMyModels deleted_at:timestamp ``` * Safely call `MyModel#delete` without losing the record forever ## Methods Please see the `SoftDelete` module and the associated tests for a description of the methods that will be added to your model. * `.not_deleted` - records without a deleted_at timestamp * `.deleted` - records with a deleted_at timestamp * `#delete` - set the deleted_at timestamp * `#delete!` - delete the record from the database * `#destroy` - set the deleted_at timestamp, and run callbacks * `#destroy!` - delete the record from the database, and run callbacks * `#restore` - set the deleted_at timestamp to nil It will be necessary to exclude deleted records when querying the model. Use the `not_deleted` scope that now exists on the model. ```ruby class MyModelsController < ApplicationController def index @my_models = MyModel.not_deleted end end ``` ## Development After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org). ## Contributing Bug reports and pull requests are welcome on GitHub at https://github.com/workbar-dev/soft_delete. ## License The gem is available as open source under the terms of the [MIT License](https://opensource.org/licenses/MIT).

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