Peptide
On-chain peptide price discovery, from your terminal.
Official TypeScript SDK for the PEPTOMA open DeSci peptide research platform
A dataloader and parser (ProtVista compliant) for proteomics/peptide data imported in UniProt
Official PEPTOMA MCP server — connect any AI agent to the PEPTOMA open DeSci peptide research platform
A module to provide the potential modification sites of a peptide
A module to provide the potential modification sites of a peptide
A class for standardizing how peptide spectrum matches (PSMs) are handled
Official TypeScript SDK for the BioHash public REST API — peptide-market oracle + on-chain commit verifier.
JavaScript/TypeScript library for parsing and manipulating ProForma peptide sequence notation
Open-source vaccine peptide selection toolkit
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CSL style for Journal of Peptide Science
150 peptide molecular icons — science-based SVGs built from real amino acid sequences. Free for noncommercial use.
CSL style for International Journal of Peptide Research and Therapeutics
GLP-1 medication data, 24,000+ provider directory, 90 peptides, 193 FAQs, and weight loss clinic search. The most comprehensive GLP-1 and peptide MCP server.
MCP server for Peptiko — research-grade peptide catalog, pricing, reconstitution calculator, and availability in Moldova/CIS/EU
A library for digesting amino acid sequences using rules from Expasy
EXPERIMENTAL · client-side verifier for ATL commit-reveal, Merkle roots, state roots, and the Peptide Design Attestation (PDA) protocol. Cross-language byte-identical with the Python and Rust reference implementations on the three frozen test vectors. Act
A library for fragmenting amino acid sequences
Many tools allowing to analyze mass spectra
Advanced tools for analyzing collections of peptides.
A module to provide unimod modifications
Read-only Model Context Protocol server for FormLab — lets Claude (and other MCP clients) read and analyze your local FormLab export. Your recipes never leave your machine.
Large peptide database for mass spectrometry
A library to handle proteomic mass spectrometry data and match peptides to spectra.
Molecular dynamics
Library for working with nucleotide and amino acid sequences
Uncertainty aware haplotype based genomic variant effect prediction
Align peptidoforms while with mass-based alignment.
Save and load common biology file formats
A command line interface for easily aligning sequences.
Translate nucleotide sequence to protein.
A repository of deep-learning peptide property prediction models for mass spectrometry data
A library to deisotope and charge state deconvolve mass spectra
A library to deisotope and charge state deconvolve mass spectra
A peptide sequence fragmenter which will handle graphing and mgf output, as well as command line fragmentation with options
A wrapper for the signal peptide prediction algorith SignalP. Not very well supported, but seems to work for the author, at least.
peptide fragmentation and protein digestion
The PlasmoAP algorithm (Foth and Ralph et. al. 2003) predicts apicoplast transit peptides in Plasmodium falciparum. This is an implementation of that algorithm.
Simulates MS1 runs given amino acid FASTA files. Outputs an MZML file. Can simulate specific data if given an MZML file containing a single isolated peptide peak.
Search for Neuropeptides based solely on the common neuropeptide markers (e.g. signal peptide, dibasic cleavage sites etc.) i.e. not based on homology to known neuropeptides. For more information: https://github.com/wurmlab/npsearch
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