Javascript typing system based on Traits
Server-agnostic Human Phenotype Ontology (.obo) parser and query resolvers
Express router for the Human Phenotype Ontology REST API
a genomics visualization tool for exploring a cohort's genotype and phenotype data
a genomics visualization tool for exploring a cohort's genotype and phenotype data
Human Phenotype Ontology — clinical phenotype terms + gene/disease annotations
Standalone HTTP server for the Human Phenotype Ontology REST API
Interactive Human Phenotype Ontology (HPO) organ visualization library
Web Fetch Request/Response handler for the Human Phenotype Ontology REST API
A React Typescript component to help visualise the Human Phenotype Ontology structure.
## Project setup ``` npm install ```
Of the 'poor metabolizer' phenotype for CYP2C19.
Keycap palette — shared design tokens, VitePress theme, and style guide for Phenotype projects
Phenotype craft library
Most likely CYP2C19 normal, i.e. CYP2C19*1, and therefore of the 'rapid metabolizer' phenotype.
The Soma trust machine for AI agents — one package: execution heart (HMAC, birth certs, heartbeat chain, credential rotation, human-consent session mode) + sensorium (temporal fingerprinting, behavioral landscape, phenotype atlas) + MCP middleware.
Phenotype quill library
Phenotype bloom library
Visualisation of gene to phenotype relationships on the GenomeRNAi database
A modular JavaScript API for programming with genetic algorithms.
a general purpose genetic algorithm, an A.I. tool useful for machine evolution and adaptation
Genetic programming helpers & strategies (tree based & multi-expression programming)
MCP Server for Enrichr gene set enrichment analysis with multi-library support
A grammar for describing microbial genotypes and phenotypes.
CLI for the Phenotyper compiler
A flexible, high-performance genetic algorithm library written in Rust
Defines `Phenotype` trait for `Peapod` crate
Exports `#[derive(Phenotype)]` macro for `Peapod` crate
Core compiler library for the Phenotyper structural artifact definition language
Common types and traits for modeling clinical information
Primitive biological trait and phenotype vocabulary for RustUse
A simple tool to simulate and analyze a stochastic agent-based model of adaptation in uncertain environments.
Generic two-tier cache with L1 (LRU) + L2 (DashMap), TTL expiration, and metrics hooks
Simple, safe cryptography
CLI task runner
MCP server for asset build and discovery operations
versioning gem that works with rails and rack
DEPRECATED PROJECT. MIGRATED TO PYTHON: https://github.com/seoanezonjic/pets. PETS suite includes three different tools. CohortAnalyzer performs the calculation of several statistics that gives an overview of a cohort of patients to analyse. Reg2Phen uses associations between pathological phenotypes and regions of the genome (these associations can be calculated from the cohort of patients if they include genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find, for a given genomic region, which pathological phenotypes have been associated with that region. The third tool, Phen2Reg, is a predictor that using the same associations as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological phenotypes observed in a patient.
To allow RubyNEAT to extend the phenotypes and evaluations in a distributed and language-neutral manner, this plugin exists. Phenotype DSL is sent in a JSON format through RabbitMQ and the evaluation results are returned via the same. You may now set up worker queues on any number of servers to do the evaluation and return the results.
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