A grammar for describing microbial genotypes and phenotypes.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
Amino's design language and front-end component library
Convert swirlnet genomes to phenotypes
Generate neural networks from swirlnet phenotypes
Visualisation of gene to phenotype relationships on the GenomeRNAi database
a general purpose genetic algorithm, an A.I. tool useful for machine evolution and adaptation
A modular JavaScript API for programming with genetic algorithms.
A modern, open-source, client-side genetic calculation engine for reptile breeding.
Pipedream Rat Genome Database Components
A basic single- and mulit-core framework for evolving networks with swirlnet
Genetic algorithms in js
Monarch PhenoGrid widget
Enhanced Alliance of Genome Resources MCP Server - High-performance JavaScript implementation with Node v23 compatibility
Novelty search for swirlnet neuroevolution library
assorted utility functions for swirlnet
Neuroevolution library based on NEAT (NeuroEvolution of Augmenting Topologies)
A Node.js framework for implementing and testing genetic algorithms.
Command-line interface to axios for REST calls from JSON input on stdin.
Core genetic algorithm of swirlnet neuroevolution library
Physical balancing demos for the swirlnet neuroevolution library
Gnomic grammar phylogeny library for NPM
Javascript library for building and working with multidimensional tables
A modular JavaScript API for programming with genetic algorithms.
Common types and traits for modeling clinical information
CLI for the Phenotyper compiler
A flexible, high-performance genetic algorithm library written in Rust
Defines `Phenotype` trait for `Peapod` crate
Exports `#[derive(Phenotype)]` macro for `Peapod` crate
Core compiler library for the Phenotyper structural artifact definition language
Primitive biological trait and phenotype vocabulary for RustUse
A simple tool to simulate and analyze a stochastic agent-based model of adaptation in uncertain environments.
Generic two-tier cache with L1 (LRU) + L2 (DashMap), TTL expiration, and metrics hooks
Simple, safe cryptography
CLI task runner
MCP server for asset build and discovery operations
versioning gem that works with rails and rack
DEPRECATED PROJECT. MIGRATED TO PYTHON: https://github.com/seoanezonjic/pets. PETS suite includes three different tools. CohortAnalyzer performs the calculation of several statistics that gives an overview of a cohort of patients to analyse. Reg2Phen uses associations between pathological phenotypes and regions of the genome (these associations can be calculated from the cohort of patients if they include genotypic & phenotypic information using NetAnalyzer, another Ruby gem) to find, for a given genomic region, which pathological phenotypes have been associated with that region. The third tool, Phen2Reg, is a predictor that using the same associations as Reg2Phen, predicts which genomic regions can be the cause of a list of pathological phenotypes observed in a patient.
To allow RubyNEAT to extend the phenotypes and evaluations in a distributed and language-neutral manner, this plugin exists. Phenotype DSL is sent in a JSON format through RabbitMQ and the evaluation results are returned via the same. You may now set up worker queues on any number of servers to do the evaluation and return the results.