Protein is http prototype mixins for Node.js
Map genome to protein coordinates and back
WebGL protein viewer
A protein viewer built with d3
A viewer for DNA, RNA, and protein sequences that supports many input formats
A lightweight, extensible React implementation of the **Nano Protein Viewer**, originally developed as a VSCode extension by [**Steven Yu**](https://marketplace.visualstudio.com/items?itemName=StevenYu.nano-protein-viewer).
Jones factors for conversion of nitrogen to protein.
Visualize protein structures using different types of 3D models. You can select from multiple [RCSB](https://www.rcsb.org/) PDB ID.
M3TRIQ — protein-ligand analysis from the terminal
Visualize protein expression in organ tissue with a heatmap showing overall and cell specific antibody staining values.
Typed client for NCBI Protein database (EFetch) with FASTA and GenBank format support
Bluegenes Protein Tissue Localisation is a tool made for [BlueGenes](http://bluegenes.apps.intermine.org) following BlueGenes Tool API. Add more description of your tool here! :)
BlueGenes wrapper for protvista protein feature viewer
This is a 3-D protein structure viewer for JBrowse 2
A parser for the Protein Data Bank (PDB) molecule format
Absorption and bioavailability of different protein sources.
STRING protein-protein interaction networks across ~12k organisms
Protein feature viewer (uniprot annotation, variants, proteomics, ...)
A protein viewer built with d3 (React Component)
GenBank flat file parser for protein and nucleotide records
A wrapper of the javascript DNA, RNA and protein sequence viewer
Displays protein domains
Visualize gene and protein interaction networks using [cytoscape.js](http://js.cytoscape.org/).
CLI for Protein
Working with protein structures
High-performance protein analysis tools
Translate nucleotide sequence to protein.
CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)
A crate to translate &str or String of RNA sequence with nucleotide into a Vec<&str> of their appropriate protein names.
Large peptide database for mass spectrometry
rvDNA — AI-native genomic analysis. 20-SNP biomarker risk scoring, streaming anomaly detection, 64-dim profile vectors, 23andMe genotyping, CYP2D6/CYP2C19 pharmacogenomics, variant calling, protein prediction, and HNSW vector search in pure Rust.
Working with protein structures
Pure-Rust implementation of NCBI BLAST (Basic Local Alignment Search Tool)
A high-performance, pure Rust library and CLI for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein-ligand and protein-nucleic acid interface support.
omicsx: SIMD-accelerated sequence alignment and bioinformatics analysis for petabyte-scale genomic data
Information-driven protein-protein docking using a genetic algorithm
Multi-platform remote procedure call (RPC) system based on Protocol Buffers
A simple ruby program that reads and synthesizes complementary mRNA sequence, and then translates mRNA sequence to make a chain of amino acids
returns Protein
Simulate protein abundances given FASTA files.
Calculate the Isoelectric point
Running and parsing of the protein transmembrane domain predictor octopus
This gem helps interface with My Ideal Protein's web app. Though they do not have a public api they do allow json formats on their clearly rails-like app.
A bioruby plugin for calculating the isoelectric point of a protein
A simple biogem that allows computation of the aliphatic index of a protein
Proteins function predictor trained with associations between protein domains (classified in CATH) and functional systems (GO, KEGG, Reactome).
Predict silk-like proteins from its amino acid sequence.
Wrapper around the ExportPred algorithm for predicting P. falciparum exported proteins. Requires local install of the program, which is available from http://bioinf.wehi.edu.au/exportpred/
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