sequence-align --------------
A flexible math expression evaluator
Rope-based persistent sequence type
Pure-JS CRC-32
Generate, and decode, base64 VLQ mappings for source maps and other uses
A viewer for DNA, RNA, and protein sequences that supports many input formats
Returns an array containing the initial elements which both input arrays have in common
A parser for ANSI escape sequences
ReactNative library for managing screen reader focus ordering
Contains parsers and serializers for ASN.1 (currently BER only)
Lightweight utilities for debouncing, throttling, and more - designed for npm packages.
## Installation
Apply a sequence of filter functions to an object
A visualization to explore sequences of events
Create parsers using parser combinators with helpful error messages
Fast and easy parser of statements in source code in any language ✂️
Run a series of dependent gulp tasks in order
Utilities for debouncing, throttling, rate-limiting, queuing, and more.
A small JS+SVG library for drawing railroad syntax diagrams.
Universal Module for Secure Random Generator in JavaScript
Utilities for debouncing and throttling functions in React.
Drop-in replacement for run-sequence for gulp 4
Anti-Hallucination AI Agent Kit — 40 specialist agents, 32 slash commands, 16 parallel Tribunal reviewers, Performance Swarm engine, Supreme Court case law pipeline, and long-running agent harness.
An Implementation of ES Observables
Sequence alignment algorithms for the Cyanea bioinformatics ecosystem
Rust bindings for abPOA: Adaptive Banded POA
Automatically generated FFI definitions for abPOA
Native Rust port of ksw2 (ksw2_extz2_sse) with stable-Rust SIMD backends
Unified short- and long-read sequence aligner written in Rust 2024. It combines minimap2-style minimizers and chaining with BWA-MEM2-style exact-match anchoring and output semantics. The goal is drop-in compatibility with bwa-mem pipelines while supporting long reads efficiently.
High-performance FASTQ reader and writer with mmap-first design. Supports plain, gzip, and BGZF inputs/outputs; optional multi-line parsing; explicit paired-end reading; sync and async APIs; optional `noodles-bgzf` interop.
Align peptidoforms while with mass-based alignment.
Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.
Implementation of Needleman-Wunsch & Smith-Waterman sequence alignment.
Support for multiple sequence alignments (MSA)
Provides sequence alignment algorithms
A simple gem to perform fast pairwise sequence alignment using seqan
Find the optimal alignment of two sequences of Ruby Objects.
Parses stockholm sequence alignment format
Common substitution matrices for sequence alignment.
does high pairwise alignment of sequencing reads with a template using bioruby and clustalw. gives template-centric output.
A Ruby Gem used for calculating a consensus (most frequent) DNA sequence from an array of ALIGNED sequences. Useful for bioinformatics pipelines to create a reference sequence when using another sequence aligning utility. Also, helpful in finding consensus regions for primer design or viral genotyping.
CfE implementation of the Gotoh sequence alignment algorithm
'ulla' is a program for calculating environment-specific substitution tables from user providing environmental class definitions and sequence alignments with the annotations of the environment classes.
Extended SAM (Sequence Alignment/Map) file parsing
making handling of the maf and the taf files easier, extraction of the alignments, alignments with deletions, specific ids, sequences associated with specific ids
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